PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010106018.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 516aa    MW: 53503.1 Da    PI: 8.7985
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010106018.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-056890123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  XP_010106018.1 68 FVCEICNKGFQRDQNLQLHRRGH 90
                    89*******************88 PP

2zf-C2H215.74.3e-05144166123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC+ C+k +  +s+ k H++t+
  XP_010106018.1 144 WKCERCSKKYAVQSDWKAHMKTC 166
                     58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-56790IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.81E-76790No hitNo description
PROSITE profilePS5015710.9496890IPR007087Zinc finger, C2H2
SMARTSM003550.0176890IPR015880Zinc finger, C2H2-like
PfamPF121718.3E-56890IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SMARTSM00355220109139IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.0E-5132165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.81E-7139165No hitNo description
SMARTSM0035577144164IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.538144172IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MGELENSSPM AVSTASADAS LSSSGYQTTA VPAAAAPPKK KRNLPGMPDP DAEVIALSPK  60
TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRT TKEVRKRVYV CPEPSCVHHN  120
PARALGDLTG IKKHFCRKHG EKKWKCERCS KKYAVQSDWK AHMKTCGTRE RDSFITHRAF  180
CDALAEESAR SQTLAVSSEG NNPNPNAKAV VASPPPPPLT PSTSVVSPAL SIQSSELPEN  240
AIGLSPPTPA TTCLITTSTT ITSCSNSNGS TTSTVFASIF APSSTVVAQP PPQTSSAASI  300
SSFPNLIPTL GRSHCTSTST STIVPTVPTI EPTSLSLSTS LYLSNNGGSS LFPTPDQHDQ  360
HHHFAQPPQP PAMSATALLQ KAAQMGAAAS NTSLLFGLTT SFSSGKELGS NASQWNGQVK  420
AENGVSAAAA GLGLGLPENS GLTDLVIGPS SAFGSQAPMT RDLLGLSIGG GGGASTGGLS  480
ALLNSFGGGS GFDITAPSSY GGEGPPERKP NGPALL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010106018.10.0Zinc finger protein MAGPIE
SwissprotQ9SCQ61e-125IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLW9S1030.0W9S103_9R
STRINGVIT_18s0001g12220.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-100C2H2-like zinc finger protein